plottingfuncs

topostats.plottingfuncs.add_bounding_boxes_to_plot(fig, ax, region_properties) → None

Add the bounding boxes to a plot.

Parameters

• fig –

• ax –

• region_properties – Region properties to add bounding boxes from.

topostats.plottingfuncs.plot_and_save(data: numpy.array, filename: Union[str, pathlib.Path], title: Optional[str] = None, interpolation: str = 'nearest', cmap: str = 'afmhot', region_properties: Optional[dict] = None)

Plot and save an image.

Parameters

• data (np.array) – Numpy array to plot.

• filename (Union[str, Path]) – Filename to save image as.

• title (str) – Title for plot.

• interpolation (str) – Interpolation to use (default ‘nearest’).

• cmap (str) – Colour map to use (default ‘afmhot’)