Source code for topostats

"""Topostats."""

import os
from importlib.metadata import version

import snoop
from matplotlib import colormaps
from packaging.version import Version

from .logs.logs import setup_logger
from .theme import Colormap

# Disable TensorFlow warnings
os.environ["TF_CPP_MIN_LOG_LEVEL"] = "3"

LOGGER = setup_logger()

__version__ = version("topostats")
__release__ = ".".join(__version__.split(".")[:-2])

TOPOSTATS_VERSION = Version(__version__)
if TOPOSTATS_VERSION.is_prerelease and TOPOSTATS_VERSION.is_devrelease:
    TOPOSTATS_BASE_VERSION = str(TOPOSTATS_VERSION.base_version)
    TOPOSTATS_COMMIT = str(TOPOSTATS_VERSION).split("+g")[1]
else:
    TOPOSTATS_BASE_VERSION = str(TOPOSTATS_VERSION)
    TOPOSTATS_COMMIT = ""
CONFIG_DOCUMENTATION_REFERENCE = """# For more information on configuration and how to use it:
# https://afm-spm.github.io/TopoStats/main/configuration.html\n"""

colormaps.register(cmap=Colormap("nanoscope").get_cmap())
colormaps.register(cmap=Colormap("gwyddion").get_cmap())

# Disable snoop
snoop.install(enabled=False)



[docs]
def log_topostats_version() -> None:
    """Log the TopoStats version, commit and date to system logger."""
    LOGGER.info(f"TopoStats version : {TOPOSTATS_VERSION}")
    LOGGER.info(f"Commit            : {TOPOSTATS_COMMIT}")