Index

A

add_bounding_boxes_to_plot() (in module topostats.plottingfuncs) align_rows() (in module topostats.filters)

amplify() (in module topostats.filters) average_background() (in module topostats.filters)

C

calc_diff() (in module topostats.filters) calc_gradient() (in module topostats.filters)

convert_path() (in module topostats.utils) create_parser() (in module topostats.topotracing) createTraceStatsObject() (topostats.dnatracing.traceStats method)

D

determineLinearOrCircular() (topostats.dnatracing.dnaTrace method)

dnaTrace (class in topostats.dnatracing) doSkeletonising() (topostats.tracingfuncs.getSkeleton method)

E

extract_channel() (in module topostats.filters) extract_img_name() (in module topostats.filters)

extract_pixel_to_nm_scaling() (in module topostats.filters) extract_pixels() (in module topostats.filters)

F

finalSkeletonisationIteration() (topostats.tracingfuncs.getSkeleton method)

find_images() (in module topostats.utils)

G

get_mask() (in module topostats.utils) get_threshold() (in module topostats.utils) getDisorderedTrace() (topostats.dnatracing.dnaTrace method)

getFittedTraces() (topostats.dnatracing.dnaTrace method) getNumpyArraysfromGwyddion() (topostats.dnatracing.dnaTrace method) getSkeleton (class in topostats.tracingfuncs) getSplinedTraces() (topostats.dnatracing.dnaTrace method)

L

load_scan() (in module topostats.io)

M

main() (in module topostats.topotracing) measureContourLength() (topostats.dnatracing.dnaTrace method) module topostats.dnatracing topostats.filters topostats.io topostats.plottingfuncs topostats.topotracing topostats.tracingfuncs topostats.utils

P

plot_and_save() (in module topostats.plottingfuncs) plotCurvature() (topostats.dnatracing.dnaTrace method)

process_scan() (in module topostats.topotracing) pruneSkeleton() (topostats.tracingfuncs.getSkeleton method)

R

read_yaml() (in module topostats.io)

remove_x_y_tilt() (in module topostats.filters) row_col_quantiles() (in module topostats.filters)

T

topostats.dnatracing module topostats.filters module topostats.io module topostats.plottingfuncs module

topostats.topotracing module topostats.tracingfuncs module topostats.utils module traceStats (class in topostats.dnatracing)

U

update_config() (in module topostats.utils)